Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015906394.1_cds_XP_016456570.1_50392
CDS Infomation

[gene=LOC107780529] [db_xref=GeneID:107780529] [protein=probable E3 ubiquitin-protein ligase ARI7] [protein_id=XP_016456570.1] [location=join(12145..12324,13113..13237,13491..13596,13731..13821,14883..15055,16323..16427,16509..16597,30366..30473,30706..30796,30943..31032,32315..32362,32770..32841,33754..33853,33955..34081,35987..36149)] [gbkey=CDS]
Sequence

ATGGAGTCTGAGGATGATATGCACGATGCTAATGATATGGAGTCGGTGGATGAGGATTTC
TACAGTGACGGTGATGGCTATGGCGGTGATGCTTTGGATAGTGACGGTGATGATGCTGAT
TATGATTTCATGGGTAATGAATCTGATGATTCCAATGACCAAGCTGTCAGTCGCTCCCAG
AAATATTATACAGTCTTGAAGGAAGAAGATATACGTCAACGACAGGAAGATGATATAACG
ACAATTTCGGCTCTTCTGTCCTTACAAAGAGAAGCTGCCTGTATACTACTTCGACGTTAT
AACTGGAGTGTGAACAAGGTGCATGAGGAGTGGTTTGCTGATGAAGAAAGAGTTCGCAAG
TCTGTCGGTTTGTTGGAGAAGTCTGTTATCCATCTCTCAAAAGTTAAGGAAGTGGCGTGT
GGGATTTGCTTTGACAACTTTCCTCCTGATGGCATAAGATCTCTTAAGTGTGGTCATCCT
TTCTGTACTAGTTGCTGGAAAGCTTACATTACCACATCCATTAATGATGGCCCTGGATGC
TTAACACTGCGGTGTCCTGACCCATCATGTGATGCTGCCATTGGTCAAAATATGATTGAT
TCGTTGGCATCTGGTGAAGATAAGGACAAGTACTATCGTTACCTTCTTAGATCCTATATT
GAAGACAATAGAAAGACAAAATGGTGTCCTGCCCCAGGTTGTGATTCTGCAGTAGAGTAC
GATCTTGGAAGTGGAAGCTATGACGTTACTTGCGGTTGTTCCTTCAGTTTTTGTTGGAAT
TGTACAGAAGAGGCTCATCGGCCCGTGGACTGTGATACTGTGGCCAAATGGATTTTGAAA
AACAGTGCCGAGTCAGAAAACATGAATTGGATCTTGGCTAATTCCAAGCCCTGTCCGAAG
TGCAAGCGGCCAATTGAGAAGAACCAAGGGTGTATGCACATGACTTGTACGCCACCATGT
AAATTTGAGTTTTGCTGGTTATGTCTTGGTGCGTGGTCAGACCATGGGGAAAGGACTGGT
GGATTTTATGCATGTAATCGCTATGAATCAGCAAAACAAGAGGGCGTGTATGATGAAGCT
GAGAGGAGGAGAGAGATGGCCAAAAACTCTCTGGAGAGATACACACATTACTACGAACGT
TGGGCAACCAACCAATCGTCGAGGCAAAAAGCAATGGCAGATCTGCATCAAATGCAAACT
GTTCATCTTGAAAAGCTTAGTGAAATACAGTGCCAGCCCGAGTCACAGTTGAAGTTCATT
TTAGAATCCTGGCAACAGATAGTTGAATGTAGGAGAGTGTTAAAATGGACTTATGCATAT
GGATACTACCTACCCGAACATGAGCATGCAAAAAGGCAGTTTTTTGAGTACTTACAAGGT
GAGGCAGAGGCTGGTTTAGAGAGGCTTCATCAATGTGCTGAAAAGGAACTCCAAACTTAC
CTTAATGCTACAGGACCGTCCAAGGATTTCAATGATTTCCGTACGAAGCTCGCTGGTCTA
ACAAGTGTTACCCGAAATTACTTTGAGAATCTGGTTAGAGCACTGGAGAATGGTCTTGCA
GATGTGGATTCCCAAGGTGCTTGTAGTAAGGCAGCCAGCTCAAAGAACGTAGCTGGGAGC
AGCAAGGCCAAAGGAGGTGGTAGGGGTAAGAGCTCCACTCGGACATGA

Peptide Sequence

PEP ID

XP_016456570.1
PEP Infomation

PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Nicotiana tabacum]
Sequence

MESEDDMHDANDMESVDEDFYSDGDGYGGDALDSDGDDADYDFMGNESDDSNDQAVSRSQ
KYYTVLKEEDIRQRQEDDITTISALLSLQREAACILLRRYNWSVNKVHEEWFADEERVRK
SVGLLEKSVIHLSKVKEVACGICFDNFPPDGIRSLKCGHPFCTSCWKAYITTSINDGPGC
LTLRCPDPSCDAAIGQNMIDSLASGEDKDKYYRYLLRSYIEDNRKTKWCPAPGCDSAVEY
DLGSGSYDVTCGCSFSFCWNCTEEAHRPVDCDTVAKWILKNSAESENMNWILANSKPCPK
CKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYESAKQEGVYDEA
ERRREMAKNSLERYTHYYERWATNQSSRQKAMADLHQMQTVHLEKLSEIQCQPESQLKFI
LESWQQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAEAGLERLHQCAEKELQTY
LNATGPSKDFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSQGACSKAASSKNVAGS
SKAKGGGRGKSSTRT

Transcript Sequence

Gene sequence data has not been registered.